John S. M^CCaskill 

Synthesis of Infotech, Biotech and Nanotech TOWARDS PROGRAMMABLE CHEMISTRY

• Research
  • Molecular Information Processing
  • Synthetic systems self-organization
  • Chemical System Evolution
    • mprDPD - mesoscale simulation
      • Motivation
      • Method
        • DPD
        • Multipole DPD
        • Reactive DPD
        • Software implementation
      • Applications
        • Endocytosis and mprDPD
        • Fusion and fission of vesicles
        • Influence of aggregation on self-replicating spots
        • RAB 5 membrane kinetics
    • EvoSelf - evolving amphiphilic systems
      • Model
      • Widom lattice model statistical mechanics
      • Amphiphile phases in Widom model
      • Combinatorial amphiphiles control multiphase system
      • Interface for evolving amphiphile self-assembly
    • GSA - Genetic Self-assembly
      • Genetic Self Assembly: Motivation
      • Self Assembling Circuits
        • SLB : Self-assembling Logic Block
        • Self-assembly of an evolved multiplier
      • GA for evolution of scalable circuits
        • Coevolution scheme for GSA
        • Evolutionary dynamics of GSA
      • Outlook for GSA
    • EvoCPU - algorithm self-assembly
      • Motivation
      • Micro-controllers and molecules
      • Reducing micro-controller complexity
      • Structured programming
      • The consequences
      • A molecular micro-controller
      • Programming such systems
    • KRD - systems kinetic RD
    • PRESS - stochastic spatial kinetics
      • Motivation
      • PRESS approach
      • Simulations with PRESS
  • Microsystems Chemistry
    • Microsystem Construction
      • FPFA concepts
      • FPFA silicon based electrode-layer design and fabrication
      • Polyimide based electrode layer
      • Soft-lithography and assembly
    • Integrated experimental platform
  • Projects (at RUB)
    • PACE
      • Artificial Cells in PACE
      • Evolutionary Self-assembly
      • Microfluidic complementation systems
      • The omega machine
    • Hepatosys
      • Mesoscale systems simulation
      • Protein sorting
        • a hierarchy of successively simpler Heinrich models
          • heinrich 4 XY csize 4 ves antisym norm
            • Original Heinrich Model
          • heinrich 4 XY csize 4 ves types
            • heinrich 4 XY constant size 4 vesicle types
          • heinrich original with cargo and sizes
            • Heinrich Model Simplified ODE:4
        • combinatorially complex sorting
        • DPD model with explicit compartments
          • Heinrich model via DPD
        • spatially resolved Heinrich model
        • stochastic diffusive Heinrich models
      • Collaboration partners
    • Electronic Chemical Cell
    • MATCHIT
    • COBRA
      • cobra_d2.3_draft_roadmap.pdf
    • CADMAD : Microfluidic Integration for DNA Library Construction by Reuse
      • Publications contributing to CADMAD Project
    • MICREAgents
• Publications
  • 2015
  • 2014
  • 2013
  • 2012
  • 2011
  • 2010
  • 2009
  • 2008
  • 2007
  • 2006
  • 2005
  • 2004 (RUB)
  • 1977-2006
  • patent_results_9.xlsx.pdf
• Teaching
• Contact
• Site Map of BioMIP Research Group
• Disclaimer
  • german